NAME¶

getVariance - estimates variance of MCMC samples

SYNOPSIS¶

getVariance -o <outFileName> [OPTIONS] [sampleFiles]

DESCRIPTION¶

Estimates variance of MCMC samples from 1 or multiple replicates.

[sample Files] should contain transposed MCMC samples from replicates.

OPTIONS¶

--help

Show this help information.

-l , --log

Use logged values. (default: Off)

--norm=<normalization>

Normalization constants for each input file provided as comma separated list of doubles (e.g. 1.0017,1.0,0.9999 ).

-o <outFileName> , --outFile=<outFileName>

Name of the output file.

-t <type> , --type=<type>

Type of variance, possible values: [sample,sqDif] for sample variance or squared difference. (default: sample)

-v , --verbose

Verbose output. (default: Off)