table of contents
| CSB-EMBD(1) | User Commands | CSB-EMBD(1) |
NAME¶
csb-embd - Sharpening of EM maps by non-negative blind deconvolution
DESCRIPTION¶
usage: csb-embd [-h] [-s PSF_SIZE] [-o OUTPUT] [-i ITERATIONS]
- [-f OUTPUT_FREQUENCY] [-v] mapfile
Sharpening of EM maps by non-negative blind deconvolution. For details see: Hirsch M, Schoelkopf B and Habeck M (2010) A New Algorithm for Improving the Resolution of Cryo-EM Density Maps.
positional arguments:¶
- mapfile
- Input Cryo EM file in CCP4 MRC format
optional arguments:¶
- -h, --help
- show this help message and exit
- -s PSF_SIZE, --psf-size PSF_SIZE
- size of the point spread function (default=15)
- -o OUTPUT, --output OUTPUT
- output directory of the sharpened maps (default=.)
- -i ITERATIONS, --iterations ITERATIONS
- number of iterations (default=1000)
- -f OUTPUT_FREQUENCY, --output-frequency OUTPUT_FREQUENCY
- create a map file each f iterations (default=50)
- -v, --verbose
- verbose mode (default=False)
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| November 2017 | csb-embd 1.2.5 |