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GT-CONGRUENCE-SPAC(1) GenomeTools Manual GT-CONGRUENCE-SPAC(1)

NAME

gt-congruence-spacedseed - Match spaced seeds.

SYNOPSIS

gt congruence spacedseed [options]

DESCRIPTION

-esa [string]

Specify index (enhanced suffix array) (default: undefined)

-pck [string]

Specify index (packed index) (default: undefined)

-q

Specify files containing the query sequences

-v [yes|no]

be verbose (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.

07/22/2020 GenomeTools 1.6.1