NAME¶

hinge - assembler for long-read sequencing data

SYNOPSIS¶

hinge {subcommand} options files

OPTIONS¶

Subcommands are described below. Run each subcommand without arguments for usage information.

filter

filter out short reads and long chimeric reads.

maximal

get maximal reads.

layout

generate a layout for assembly

clip

prune and clip output of the layout command

draft-path

get assembly graph as list of nodes

draft

construct draft assembly

correct-head

convert fasta file to daligner-specific format

consensus

construct consensus sequence

gfa

Create a graphical fragment assembly file from consensus output

visualize, visualise