NAME¶

prokka-genbank_to_fasta_db - rapid annotation of prokaryotic genomes

SYNOPSIS¶

prokka-genbank_to_fasta_db [options] [genome1.gbk ...] > proteins.faa

DESCRIPTION¶

--help

This help.

--verbose!

Verbose progress (default '0').

--format=s

Input format (default 'genbank').

--idtag=s

What tag to use as Fasta ID (default 'protein_id').

--sep=s

Separator between EC/gene/product (default '~~~').

--blank=s

Replace empty EC/gene/product with this (default '').

--pseudo!

Include /pseudo genes (default '0').

--hypo!

Include 'hypothetical protein' genes (default '0').

--minlen=i

Minimum peptide length (default '0').