NAME¶

minimap2.py - minimap2 Python3 interface

SYNOPSIS¶

minimap2.py [options] <ref.fa>|<ref.mmi> <query.fq>

OPTIONS¶

-x STR

preset: sr, map-pb, map-ont, asm5, asm10 or splice

-n INT

mininum number of minimizers

-m INT

mininum chaining score

-k INT

k-mer length

-w INT

minimizer window length

-r INT

band width

-c

output the cs tag

AUTHOR¶

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.