table of contents
| RNR-PRUNE(1) | User Commands | RNR-PRUNE(1) |
NAME¶
rnr-prune - prunes a list of taxa from a bootstrap tree or a single tree with branch lengths
SYNOPSIS¶
rnr-prune [-i <bootTrees> | -t <treeFile>] -x <excludeFile> -n <runId> [-w <workingDir>] [-h]
DESCRIPTION¶
This program prunes a list of taxa from a bootstrap tree or a single tree with branch lengths (such as a best-known ML/MP-tree).
OPTIONS¶
OBLIGATORY¶
- -x <excludeFile>
- A list of taxa (one taxon per line) to prune from either the bootstrap trees or the single best-known tree.
- -i <bootTrees>
- A collection of bootstrap trees.
- -t <treeFile>
- A single tree with branch lengths. Use either this flag or the -i flag.
- -n <runId>
- An identifier for this run.
OPTIONAL¶
- -w <workDir>
- A working directory where output files are created.
- -h
- This help file.
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| March 2017 | rnr-prune 1.0 |