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RGFA-FINDCRISPRS(1)   RGFA-FINDCRISPRS(1)

NAME

rgfa-findcrisprs - find CRISPRs in assembly graphs

SYNOPSIS

rgfa-findcrisprs <gfa>

DESCRIPTION

Finds CRISPRs given in assembly graphs specified by a GFA file. CRISPRs have a structure ARU1RU..RUnRB where |U|~|R| in [24..50].

SEE ALSO

gfadiff(1), rgfa-mergelinear(1), rgfa-simdebruijn(1)

BUGS

Please report bugs to the RGFA issue tracker: <https://github.com/ggonnella/rgfa/issues>