table of contents
| R_MDS(1) | User Commands | R_MDS(1) |
NAME¶
R_mds - project distance matrix into lower number of dimensions
SYNOPSIS¶
R_mds -k <filtered_kmers.txt> -p <pheno_file>
DESCRIPTION¶
Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github wiki for more details
OPTIONS¶
Required¶
- -d, --dist
- Distance matrix output by kmds
- -p, --pheno
- Phenotype file used by seer
Optional¶
- -o, --output
- Output prefix (default 'all_structure')
- --pc
- Number of dimensions to project into (default 3)
- -R
- R executable (default 'which R')
- -h, --help
- Displays this message
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| March 2017 | R_mds 1.1.2 |