Scroll to navigation
| FILTER_COUNTS(1) |
User Commands |
FILTER_COUNTS(1) |
NAME¶
filter_counts - read a ChIP-seq data file and filters out all read counts
SYNOPSIS¶
filter_counts [options] [<] <SGA File>
DESCRIPTION¶
- - version 1.5.5 where options are:
- -h
- Show this help text
- -d
- Print debug information
- -f
- Feature defining the user-defined regions of interest (default=RMSK)
- -r
- Retain Mode on
- The program reads a ChIP-seq data file (or from stdin [<]) in SGA
format (<SGA File>) and filters out all read counts that occur
within user-defined regions of interest, such as Repeat Mask regions
(feature=RMSK). If 'Retain Mode' is on, it only retains those lines that
are within the user-defined regions, in which case the annotation of the
user-defined regions is added to the output SGA file.
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.
