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GT-ENCSEQ-SAMPLE(1) GenomeTools Manual GT-ENCSEQ-SAMPLE(1)

NAME

gt-encseq-sample - Decode/extract encoded sequences by random choice.

SYNOPSIS

gt encseq sample (sequence_file|indexname)

DESCRIPTION

-mirrored [yes|no]
virtually append the reverse complement of each sequence (default: no)

-lossless [yes|no]

allow lossless original sequence retrieval (default: no)

-dir [string]

specify reading direction (fwd, cpl, rev, rcl) (default: fwd)

-singlechars [yes|no]

do not use a GtEncseqReader but access each sequence character separately (default: no)

-length [value]

minimum length to be extracted (default: undefined)

-seqrange [start end]

extract multiple consecutive sequences (default: undefined)

-output [...]

specify output format (choose from fasta|concat) (default: fasta)

-sepchar [string]

specify character to print as GT_SEPARATOR (default: |)

-help

display help for basic options and exit

-help+

display help for all options and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.
07/29/2020 GenomeTools 1.6.1