other versions
- buster 1.6.3+dfsg-1
- buster-backports 2.0.0+dfsg-1~bpo10+1
- testing 2.0.1+dfsg-1
- unstable 2.0.1+dfsg-1
| REMOVEDUP(1) | User Commands | REMOVEDUP(1) |
NAME¶
removeDup - Remove duplicated readsUSAGE¶
removeDup [options] -i <input_file> -o <output_file>Required arguments:
-i <string> Name of input file in SAM/BAM format.
-o <string> Name of output SAM file including filtered reads. The format is
- BAM unless '-S' is specified.
Optional arguments:
- -S
- Generate the SAM format output.
- -r <int>
- Specify the duplication cutoff. All the reads mapped to a location are removed from the output if the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.
-t <string> A directory storing temporary files generated by the program.
ERROR: The input file is neither a BAM file nor a SAM file.
| February 2020 | removeDup 2.0.0+dfsg-1~bpo10+1 |