NAME¶

Aevol - an in silico experimental evolution platform

SYNOPSIS¶

aevol_misc_lineage -h | --help
aevol_misc_lineage -V | --version
aevol_misc_lineage [-b TIMESTEP] [-e TIMESTEP] [-I INDEX | -R RANK] [-F] [-v]

DESCRIPTION¶

Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.

aevol_misc_lineage

reconstruct the lineage of a given individual from the tree files

OPTIONS¶

-h, --help

print help, then exit

-V, --version

print version number, then exit

-b, --begin TIMESTEP
specify time t0 up to which to reconstruct the lineage

-e, --end TIMESTEP
specify time t_end of the indiv whose lineage is to be reconstructed

-I, --index INDEX
specify the index of the indiv whose lineage is to be reconstructed

-R, --rank RANK
specify the rank of the indiv whose lineage is to be reconstructed default: best individual

-F, --full-check
perform genome checks whenever possible

-v, --verbose
be verbose

SEE ALSO¶

aevol_create, aevol_modify, aevol_propagate, aevol_run