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EXTRACTTRANSCRIPTINFO.PY(1) User Commands EXTRACTTRANSCRIPTINFO.PY(1)

NAME

extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file

SYNOPSIS

extractTranscriptInfo.py [options] <inputFile> <outputFile>

DESCRIPTION

This program extracts information about transcripts from reference Fasta file. This is partially replaced by using SAM header, which however does not include information about transcript-gene grouping. Current version of parseAlignment extracts this information from a reference sequence file (making this script obsolete).

OPTIONS

-h, --help
show this help message and exit
-v, --verbose
Verbose output
-t TYPE, --type=TYPE
Type of file to parse: ensembl, cuff, other
December 2018 extractTranscriptInfo.py 0.7.5+dfsg