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| CNVKIT_ANTITARGET(1) |
User Commands |
CNVKIT_ANTITARGET(1) |
NAME¶
cnvkit_antitarget - Derive off-target ("antitarget") bins from target
regions.
DESCRIPTION¶
usage: cnvkit antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]
- [-o FILENAME]
- targets
positional arguments:¶
- targets
- BED or interval file listing the targeted regions.
optional arguments:¶
- -h, --help
- show this help message and exit
- -g FILENAME, --access FILENAME
- Regions of accessible sequence on chromosomes (.bed), as output by
genome2access.py.
- -a AVG_SIZE, --avg-size AVG_SIZE
- Average size of antitarget bins (results are approximate). [Default:
150000]
- -m MIN_SIZE, --min-size MIN_SIZE
- Minimum size of antitarget bins (smaller regions are dropped). [Default:
1/16 avg size, calculated]
- -o FILENAME, --output FILENAME
- Output file name.
