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| CNVKIT_SEX(1) |
User Commands |
CNVKIT_SEX(1) |
NAME¶
cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and
Y.
DESCRIPTION¶
usage: cnvkit sex [-h] [-y] [-o FILENAME] filenames [filenames ...]
positional arguments:¶
- filenames
- Copy number or copy ratio files (*.cnn, *.cnr).
optional arguments:¶
- -h, --help
- show this help message and exit
- -y, --male-reference, --haploid-x-reference
- Assume inputs were normalized to a male reference (i.e. female samples
will have +1 log-coverage of chrX; otherwise male samples would have
-1 chrX).
- -o FILENAME, --output FILENAME
- Output table file name.
