NAME¶
ecofind - searching for taxonomic and rank and taxonomy id for given regular
expression patterns
DESCRIPTION¶
ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It
helps to estimate Barcode primers quality.
This program belongs to the exoPCR package.
SYNOPSIS¶
ecofind [options] <patterns>
OPTIONS¶
- -a : [A]ll enable the search on all alternative names and not only
scientific names.
- -d : [D]atabase containing the taxonomy.
- To match the expected format, the database has to be formatted first by
the ecoPCRFormat.py program located in the tools directory. Write the
database radical without any extension.
- -h : [H]elp - print <this> help
- -l : [L]ist all taxonomic rank available for -r option
- -P : [P]ath : add a column containing the full path for each
displayed taxon
- -p : [P]arents : specifying this option displays all parental
tree's information for the given taxid.
- -r : [R]estrict to given taxonomic rank
- -s : [S]ons: specifying this option displays all subtree's
information for the given taxid.
- -P : Display taxonomic [P]ath as supplementary column in
output
- arguments:
- <taxon> name pattern bearing regular expressions
