NAME¶
ecogrep - filtering ecoPCR result based on taxonomic id filter and regular
expression pattern
SYNOPSIS¶
ecogrep [options] filename
DESCRIPTION¶
ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It
helps to estimate Barcode primers quality.
This program belongs to the exoPCR package.
OPTIONS¶
- -1 : [FIRST] : compare the given pattern with direct strand
oligonucleotide
- -2
- : [SECOND] : compare the given pattern with reverse strand
oligonucleotide
- -d
- : [D]atabase containing taxonomic information
- -e
- : [E]rrors : max error allowed in pattern match (option-1, -2 and
-p) (0 by default)
- -p
- : [P]attern : oligonucleotide pattern
- -h
- : [H]elp : print <this> help
- -i
- : [I]gnore subtree under given taxonomic id
- -r
- : [R]estrict search to subtree under given taxomic id
- -v
- : in[V]ert the sense of matching, to select non-matching lines.
- argument:
- ecoPCR output file name
