NAME¶
fastaq_trim_contigs - Trims a set number of bases off the end of every contig
DESCRIPTION¶
usage: fastaq_trim_contigs [options] <infile> <outfile>
Trims a set number of bases off the end of every contig, so gaps
get bigger and contig ends are removed. Bases are replaced with Ns. Any
sequence that ends up as all Ns is lost
positional arguments:¶
- infile
- Name of input file
- outfile
- Name of output file
optional arguments:¶
- -h, --help
- show this help message and exit
- --trim_number TRIM_NUMBER
- Number of bases to trim around each gap, and off ends of each sequence
[100]
