NAME¶
graphlan - circular representations of taxonomic and phylogenetic trees
SYNOPSIS¶
graphlan [-h] [--format ['output_image_format']] [--warnings WARNINGS]
[--positions POSITIONS] [--dpi image_dpi] [--size image_size] [--pad pad_in]
[--external_legends] [-v] input_tree output_image
DESCRIPTION¶
GraPhlAn is a software tool for producing high-quality circular representations
of taxonomic and phylogenetic trees. It focuses on concise, integrative,
informative, and publication-ready representations of phylogenetically- and
taxonomically-driven investigation.
OPTIONS¶
positional arguments:¶
- input_tree
- the input tree in PhyloXML format
- output_image
- the output image, the format is guessed from the extension unless
--format is given. Available file formats are: png, pdf, ps, eps,
svg
optional arguments:¶
- -h, --help
- show this help message and exit
- --format ['output_image_format']
- set the format of the output image (default none meaning that the format
is guessed from the output file extension)
- --warnings WARNINGS
- set whether warning messages should be reported or not (default 1)
- --positions POSITIONS
- set whether the absolute position of the points should be reported on the
standard output. The two cohordinates are r and theta
- --dpi image_dpi
- the dpi of the output image for non vectorial formats
- --size image_size
- the size of the output image (in inches, default 7.0)
- --pad pad_in
- the distance between the most external graphical element and the border of
the image
- --external_legends
- specify whether the two external legends should be put in separate file or
keep them along with the image (default behavior)
- -v, --version
- Prints the current GraPhlAn version and exit
AUTHOR¶
The software was written by Nicola Segata <nsegata@hsph.harvard.edu>
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.
