Scroll to navigation
NAME¶
hinge - assembler for long-read sequencing data
SYNOPSIS¶
hinge {subcommand} options files
OPTIONS¶
Subcommands are described below. Run each subcommand without arguments for usage
information.
- filter
- filter out short reads and long chimeric reads.
- maximal
- get maximal reads.
- layout
- generate a layout for assembly
- clip
- prune and clip output of the layout command
- draft-path
- get assembly graph as list of nodes
- draft
- construct draft assembly
- correct-head
- convert fasta file to daligner-specific format
- consensus
- construct consensus sequence
- gfa
- Create a graphical fragment assembly file from consensus
output
visualize, visualise
