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JALIGNER(1)   JALIGNER(1)

NAME

jaligner - Smith-Waterman algorithm with Gotoh's improvement

SYNOPSIS

jaligner <s1> <s2> <matrix> <open> <extend>

Or just type jaligner to see the GUI.

EXAMPLES

jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5

HOMEPAGE

<http://jaligner.sourceforge.net/>