NAME¶
gmt music bmr - Calculate gene coverages and background mutation rates.
VERSION¶
This document describes gmt music bmr version 0.04 (2018-07-05 at 09:17:13)
SYNOPSIS¶
gmt music bmr ...
DESCRIPTION¶
These tools are part of the MuSiC suite.
SUB-COMMANDS¶
GENERAL¶
- calc-bmr
- Calculates mutation rates given per-gene coverage (from "music bmr
calc-covg"), and a mutation list
- calc-covg
- Uses calcRoiCovg.c to count covered bases per-gene for each given
tumor-normal pair of BAMs.
- calc-covg-helper
- Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair
of BAMs.
- calc-wig-covg
- Count covered bases per-gene for each given wiggle track format file.
LICENSE¶
Copyright (C) 2010-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version
3. See the associated LICENSE file in this distribution.
AUTHORS¶
Cyriac Kandoth, Ph.D.
