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| MAPMERS-DEPTH(1) |
User Commands |
MAPMERS-DEPTH(1) |
NAME¶
mapMers-depth - report information about mapping kmers to sequences
SYNOPSIS¶
mapMers-depth {-count|-depth|-stats}
-mers MERYL -m MERSIZE
-seq IN.FASTA
OPTIONS¶
Modes of operation¶
For sequence ordinal 's' and position in that sequence 'p':
- -count
- reports the count (c) of the single kmer that starts at position (p).
- Format: 's p c'
- -depth
- reports the number (n) of kmers that span position (p).
- Format: 's p n'
- -stats
- reports the minimum (m), maximum (M), and average (a) count of all mers
that span position (p). also reports total count (t) and number of kmers
(n)
- Format: 's p m M a t n'
General¶
- -m MERSIZE
- -mers MERYL
- meryl(1) database
- -seq IN.FASTA
- fasta input sequence
