NAME¶
lav2murasaki.pl -- convert a LAV file (ie: from Blastz) into a Murasaki set of
files
SYNOPSIS¶
lav2murasaki.pl [options] <input file>
OPTIONS¶
--ungapped|-u => LAV files have "gapped regions" composed of
"ungapped regions". Using this option creates 1 anchor for each
ungapped region (this also provides a .bitscore file, as each ungapped region
contains a percent identity field).
--verbose|-v => More verbose output to stdout. Can be applied
up to 3 times (anything beyond 1 gets messy though, as each anchor gets 1
line of output).
You and Toadofsky make beautiful music!