Scroll to navigation

PXAA2CDN(1) User Commands PXAA2CDN(1)

NAME

pxaa2cdn - Takes in AA alignment and unaligned Nucleotide file to give a Codon Alignment.

SYNOPSIS

pxaa2cdn [OPTION]...

DESCRIPTION

Takes in AA alignment and unaligned Nucleotide file to give a Codon Alignment. This will get rid of any sequences found in either only the Nucleotide or the Amino Acid Alignment This will take fasta, fastq, phylip, and nexus inputs.
-a, --aaseqf=FILE
input sequence file, stdin otherwise
-n, --nucseqf=FILE
input sequence file, stdin otherwise
-o, --outf=FILE
output fasta file, stout otherwise
-h, --help
display this help and exit
-V, --version
display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
May 2018 pxaa2cdn 0.99+ds