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PXTLATE(1) |
User Commands |
PXTLATE(1) |
NAME¶
pxtlate - Translate DNA alignment to amino acids.
SYNOPSIS¶
pxtlate [OPTION]...
DESCRIPTION¶
Translate DNA alignment to amino acids. NOTE: assumes sequences are in frame.
This will take fasta, fastq, phylip, and nexus inputs.
- -s, --seqf=FILE
- input nucleotide sequence file, stdin otherwise
- -t, --table=STRING
- which translation table to use. currently available: 'std' (standard,
default) 'vmt' (vertebrate mtDNA) 'ivmt' (invertebrate mtDNA) 'ymt' (yeast
mtDNA)
- -o, --outf=FILE
- output aa sequence file, stout otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.