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PXTLATE(1) User Commands PXTLATE(1)

NAME

pxtlate - Translate DNA alignment to amino acids.

SYNOPSIS

pxtlate [OPTION]...

DESCRIPTION

Translate DNA alignment to amino acids. NOTE: assumes sequences are in frame. This will take fasta, fastq, phylip, and nexus inputs.
-s, --seqf=FILE
input nucleotide sequence file, stdin otherwise
-t, --table=STRING
which translation table to use. currently available: 'std' (standard, default) 'vmt' (vertebrate mtDNA) 'ivmt' (invertebrate mtDNA) 'ymt' (yeast mtDNA)
-o, --outf=FILE
output aa sequence file, stout otherwise
-h, --help
display this help and exit
-V, --version
display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
May 2018 pxtlate 0.99+ds