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PXVCF2FA(1)

User Commands

PXVCF2FA(1)

NAME¶

pxvcf2fa - Convert vcf file to fasta.

SYNOPSIS¶

pxvcf2fa [OPTION]... [FILE]...

DESCRIPTION¶

Convert vcf file to fasta. Currently only handles haploid data; phased data will come soon. Can read from stdin or file.

-s, --seqf=FILE: input vcf file, stdin otherwise
-o, --outf=FILE: output fasta sequence file, stout otherwise
-u, --uppercase: export characters in uppercase
-h, --help: display this help and exit
-V, --version: display version and exit

REPORTING BUGS¶

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR¶

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

May 2018

pxvcf2fa 0.99+ds