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PicardCommandLine(1) User Commands PicardCommandLine(1)

NAME

PicardCommandLine - manipulate SAM and BAM files

SYNOPSIS

PicardCommandLine COMMAND [OPTION]...

DESCRIPTION

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.

Picard Tools includes lots of utilities to manipulate SAM and BAM files. The whole list with a short description can be obtained by running PicardCommandLine -h.

Description of the options and parameters of all commands can be obtained by running PicardCommandLine COMMAND -h.

REPORTING BUGS

samtools-devel@lists.sourceforge.net

COPYRIGHT

Copyright 2010 The Broad Institute

SEE ALSO

http://broadinstitute.github.io/picard/
September 2015 picard-tools 1.138