table of contents
| SURANKCO-TRAINING(1) | User Commands | SURANKCO-TRAINING(1) |
NAME¶
surankco-training - training of random forest using contig features and contig scoresSYNOPSIS¶
surankco-training [options]DESCRIPTION¶
Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).OPTIONS¶
-f FEATURES, --features=FEATURES
- Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("*.features.txt")
-d DIRECTORY, --directory=DIRECTORY
- Indicate a directory containing surankco feature files ("*.features.txt")
-o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME
- Indicate a name for the export of the random forest classifiers (default = "surankco_rfs.RData")
-e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE
- Indicate an exponential distribution quantile to divide scores (default: 0.25)
-m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS
- Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file
-h, --help
- Show this help message and exit
AUTHOR¶
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.| March 2016 | surankco-training 0.0.r5 |