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draw-tree(1) draw-tree(1)

NAME

draw-tree - Draw NEWICK (and some other) formatted files.

SYNOPSIS

draw-tree [OPTIONS] tree file

DESCRIPTION

Draw NEWICK (and some other) formatted files.

INPUT OPTIONS:

Produce help message
Page width in inches
Page height in inches
predicates to examine
Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf, svg
Output filename (without extension)
Consider only full splits by collapsing any partial splits.
Number of iterations for layout algorithm
Font size for taxon names
Number of iterations for layout algorithm with small-angle penalties
Are the names horizontal or angled?
Give node lengths evenly to neighboring branches and zero the node lengths.
Layout method: graph, equal-angle, equal-daylight, etc.
For equal-daylight layout: take as much daylight as possible?
Start an energy layout with positions from the equal-angle layout - only for multifurcating trees
For equal-daylight layout: reject rotations that shade other groups?
Draw wandering-ranges in MC trees as clouds.
Random seed
Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.

Feb 2018