Scroll to navigation

tree-mean-lengths(1) tree-mean-lengths(1)

NAME

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

tree-mean-lengths tree-file < in-file

DESCRIPTION

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

produce help message
tree to re-root
number of tree samples to skip
Read until this number of trees.
Comma-separated taxa to remove
factor by which to subsample
report standard deviation of branch lengths instead of mean
ignore branches not in the specified topology
Don't die if no trees match the topology
Remove partial branches
random seed
Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

Benjamin Redelings.

Feb 2018