NAME¶

randomFQ - ea-utils: return random entries from the input fastq

DESCRIPTION¶

Unknown option: h usage: ./randomFQ ( -c <count> | -p <pct>) [-fasta] [-out <prefix>] [-seed <int>] <input-fastq> [<input-2> [<index-3>] ] Returns <count> number of random entries from the input fastq. Output is fastq, unless you specify -fasta If the -out parameter ends in .gz, the result is gzipped in-place. -p returns a % of total reads, -c returns a fixed count. SINGLE END: Outputs to standard output, unless -out <file> is specified. PAIRED END: Pass 2 (or 3) files as input, -out is required. If the paired-end output contains a "%" sign, it is replaced with the 1 & 2 for paired-end. IE: -o output_%.fastq.gz Otherwise it's jsut output_1 and output_2 *** If one file is an indexed read, it has to be the 3rd file (for now).