DBIBLAST(1e) | EMBOSS Manual for Debian | DBIBLAST(1e) |
NAME¶
dbiblast - Index a BLAST databaseSYNOPSIS¶
dbiblast -dbname string
-directory directory
-filenames string
-release string
-date string
-seqtype list
-blastversion list
-fields list
-exclude string
-sortoptions string
-maxindex integer
-systemsort boolean
-cleanup boolean
-sourcefile boolean
-outfile outfile
-indexoutdir outdir
dbiblast -help
DESCRIPTION¶
dbiblast is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).OPTIONS¶
Input section¶
-dbname string -directory directoryDefault value: .
-filenames string
Default value: $(dbname)
Required section¶
-release stringDefault value: 0.0
-date string
Default value: 00/00/00
-seqtype list
Default value: unknown
-blastversion list
Default value: unknown
Advanced section¶
-fields listDefault value: acc
-exclude string
-sortoptions string
Sort options, typically '-T .' to use current directory
for work files and '-k 1,1' to force GNU sort to use the first field Default
value: -T . -k 1,1
-maxindex integer
-systemsort boolean
Default value: Y
-cleanup boolean
Default value: Y
-sourcefile boolean
Output section¶
-outfile outfile -indexoutdir outdirDefault value: .
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
dbiblast is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |