NAME¶

fastaq_to_fasta

DESCRIPTION¶

fastaq_to_fasta <infile> <outfile> Converts sequence file to FASTA format

positional arguments:¶

infile

Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip

outfile

Name of output file

optional arguments:¶

-h, --help

show this help message and exit

-l LINE_LENGTH, --line_length LINE_LENGTH

Number of bases on each sequence line of output file [60]

-s, --strip_after_whitespace

Remove everything after first whitesapce in every sequence name

AUTHOR¶

fastaq_to_fasta was originally written by Martin Hunt (mh12@sanger.ac.uk)

COPYING¶

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.