gmt music bmr¶
NAME¶
gmt music bmr - Calculate gene coverages and background mutation rates.
VERSION¶
This document describes gmt music bmr version 0.04 (2013-05-14 at 16:03:05)
SYNOPSIS¶
gmt music bmr ...
DESCRIPTION¶
These tools are part of the MuSiC suite.
SUB-COMMANDS¶
GENERAL¶
- calc-bmr
- Calculates mutation rates given per-gene coverage (from "music bmr
calc-covg"), and a mutation list
- calc-covg
- Uses calcRoiCovg.c to count covered bases per-gene for each given
tumor-normal pair of BAMs.
- calc-covg-helper
- Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair
of BAMs.
- calc-wig-covg
- Count covered bases per-gene for each given wiggle track format file.
LICENSE¶
Copyright (C) 2010-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the
associated LICENSE file in this distribution.
AUTHORS¶
Cyriac Kandoth, Ph.D.
SEE ALSO¶
genome-music-bmr-calc-covg(1),
genome-music-bmr-calc-bmr(1),
genome-music(1),
genome(1)
