NAME¶
tree-ppuzzle - Reconstruction of phylogenetic trees by maximum likelihood
(parallelized version)
SYNOPSIS¶
tree-ppuzzle
DESCRIPTION¶
This manual page documents briefly the
tree-ppuzzle command. This manual
page was written for the Debian GNU/Linux distribution because the original
program does not have a manual page.
TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!
tree-puzzle is an interactive console program that implements a fast tree
search algorithm, quartet puzzling, that allows analysis of large data sets
and automatically assigns estimations of support to each internal branch.
TREE-PPUZZLE also computes pairwise maximum likelihood distances as well as
branch lengths for user specified trees. Branch lengths can also be calculated
under the clock-assumption. In addition, TREE-PPUZZLE offers a novel method,
likelihood mapping, to investigate the support of a hypothesized internal
branch without computing an overall tree and to visualize the phylogenetic
content of a sequence alignment.
This program is the paralelized version of tree-puzzle.
OPTIONS¶
There are no options. For usage please look at
/usr/share/doc/tree-puzzle/tree-puzzle.pdf.
SEE ALSO¶
phylip(1),
treetool(1).
tree-puzzle(1).
This manual page was written by Dr. Guenter Bechly <gbechly@debian.org>,
for the Debian GNU/Linux system (but may be used by others).
