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| FML-ASM(1) |
User Commands |
FML-ASM(1) |
NAME¶
fml-asm - assemble Illumina short reads in small regions
SYNOPSIS¶
fml-asm [options] <in.fq>
OPTIONS¶
- -e INT
- k-mer length for error correction (0 for auto; -1 to disable)
[0]
- -c INT1[,INT2]
- range of k-mer & read count thresholds for ec and graph cleaning
[4,8]
- -l INT
- min overlap length during initial assembly [33]
- -r FLOAT
- drop an overlap if its length is below maxOvlpLen*FLOAT [0.7]
- -t INT
- number of threads (don't use multi-threading for small data sets) [1]
- -A
- discard heterozygotes (apply this to assemble bacterial genomes)
