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Bio::Roary::External::Blastp(3pm) User Contributed Perl Documentation Bio::Roary::External::Blastp(3pm)

NAME

Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command

VERSION

version 3.12.0

SYNOPSIS

Wrapper around NCBIs blastp command 

   use Bio::Roary::External::Blastp;
   
   my $blast_database= Bio::Roary::External::Blastp->new(
     fasta_file => 'contigs.fa',
     blast_database => 'db',
     exec       => 'blastp',
     output_file => 'results.out'
   );
   
   $blast_database->run();

METHODS

result_file

Returns the path to the results file

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
2019-01-31 perl v5.24.1