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Bio::Roary::External::GeneAlignmentFromNucleotides(3pm) User Contributed Perl Documentation Bio::Roary::External::GeneAlignmentFromNucleotides(3pm)

NAME

Bio::Roary::External::GeneAlignmentFromNucleotides - Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT

VERSION

version 3.12.0

SYNOPSIS

Take in multi-FASTA files of nucleotides and align each file with PRANK or MAFFT 

   use Bio::Roary::External::GeneAlignmentFromNucleotides;
   
   my $seg = Bio::Roary::External::GeneAlignmentFromNucleotides->new(
     fasta_files => [],
   );
   
   $seg->run();

METHODS

output_file

Returns the path to the results file

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
2019-01-31 perl v5.24.1