Scroll to navigation

Bio::Roary::FilterFullClusters(3pm) User Contributed Perl Documentation Bio::Roary::FilterFullClusters(3pm)

NAME

Bio::Roary::FilterFullClusters - Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters

VERSION

version 3.12.0

SYNOPSIS

Take an a clusters file from CD-hit and the fasta file and output a fasta file without full clusters use Bio::Roary::FilterFullClusters; 

   my $obj = Bio::Roary::FilterFullClusters->new(
       clusters_filename        => $cluster_file,
       fasta_file           => $fasta_file,
       number_of_input_files => 10,
       output_file => 'filtered_file'
     );
   $obj->filter_full_clusters_from_fasta();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
2019-01-31 perl v5.24.1