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| EXTRACTBCITREES(1) |
User Commands |
EXTRACTBCITREES(1) |
NAME¶
extractBCITrees - part of mauveAligner package reads all trees and their
posterior from a set of MrBayes .trprobs files
SYNOPSIS¶
extractBCITrees <random seed> <BCI threshold> <max
output trees> <MrBayes .trprobs input file 1 .. N> <nexus
output file>
DESCRIPTION¶
This program reads all trees and their posterior from a set of MrBayes .trprobs
files and sums and normalizes posteriors for each topology. All trees that
meet a Bayes Credible Interval threshold will be saved, up to some maximum
number of trees. <BCI Threshold> A number between 0 and 1 giving the BCI
threshold. 0.9 is a good choice. <max output trees> Limit the output to
this many trees. All trees in the input file must have the same number of taxa
and the same taxon labels
