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Bio::Roary::External::Mafft(3pm) User Contributed Perl Documentation Bio::Roary::External::Mafft(3pm)

NAME

Bio::Roary::External::Mafft - Wrapper to run mafft

VERSION

version 3.8.0

SYNOPSIS

Wrapper to run mafft use Bio::Roary::External::Mafft; 

        my $mafft_obj = Bio::Roary::External::Mafft->new(
          input_filename  => $fasta_file,
          output_filename => $fasta_file.'.aln',
          job_runner      => 'Local'
        );
        $mafft_obj->run();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
2017-01-25 perl v5.24.1