NAME¶

bamindex - create index for BAM file

SYNOPSIS¶

bamindex [options]

DESCRIPTION¶

bamindex reads a BAM file from standard input and produces a BAM index (.bai) file for this BAM file on standard output.

verbose=<1>: Valid values are

1:

print progress report on standard error

0:

do not print progress report

tmpfile=<filename>: set the prefix for temporary file names. By default temporary files are created in the current directory.

AUTHOR¶

Written by German Tischler.

REPORTING BUGS¶

Report bugs to <germant@miltenyibiotec.de>

COPYRIGHT¶

Copyright © 2009-2013 German Tischler, © 2011-2013 Genome Research Limited. License GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.