NAME¶

partit2bed.pl - converts the output of the ChIP-Seq partitioning program to BED format

DESCRIPTION¶

partit2bed.pl [options] <ChIP-Part out file>

where options are:

-h|--help

Show this stuff

--db <path>

Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'

-t|--track <track>

BED track name [def: Test-BED]

-d|--desc <desc>

Description field of the BED header line [def: ChIP-Seq]

-n <int>

Chromosome number (BED declaration lines) [def: 0 - all chromosomes]

-b <int>

Chromosome start [def: -1 - entire chrom region]

-e <int>

Chromosome end [def: -1 - entire chrom region]

The program converts the output of the ChIP-Seq partitioning program to BED format.

AUTHOR¶

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.