Commands¶

 -v, --version

Show version string.

 -h, --help

Show help message.

-D, --display=<opt>

Translate the makeflow to the desired visualization format:
dot DOT file format for precise graph drawing.
ppm PPM file format for rapid iconic display.
cyto Cytoscape format for browsing and customization.
dax DAX format for use by the Pegasus workflow manager.
json JSON representation of the DAG.

 

Options for dot output:

 --dot-merge-similar

Condense similar boxes

 --dot-proportional

Change the size of the boxes proportional to file size

 --dot-no-labels

Show only shapes with no text labels.

 --dot-details

Display a more detailed graph including an operating sandbox for each task.

 --dot-task-id

Set task label to ID number instead of command.

 --dot-graph-attr

Set graph attributes.

 --dot-node-attr

Set node attributes.

 --dot-edge-attr

Set edge attributes.

 --dot-task-attr

Set task attributes.

 --dot-file-attr

Set file attributes.

 

The following options for ppm generation are mutually exclusive:

 --ppm-highlight-row <row>

Highlight row <row> in completion grap

 --ppm-highlight-file <file>

Highlight node that creates file <file> in completion graph

 --ppm-highlight-executable <exe>

Highlight executable <exe> in completion grap

 --ppm-show-levels

Display different levels of depth in completion graph

 

Options for JSON output:

 --json

Use JSON format for the workflow specification.

 --jx

Use JX format for the workflow specification.

 --jx-args <<file>>

Evaluate the JX input with keys and values in file defined as variables.

 --jx-define <<var>=<expr>>

Set the JX variable VAR to the JX expression EXPR.