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CIRDNA(1e) EMBOSS Manual for Debian CIRDNA(1e)

NAME

cirdna - Draws circular maps of DNA constructs

SYNOPSIS

cirdna -infile infile [-maxgroups integer] [-maxlabels integer] -ruler boolean -blocktype list [-originangle float] -posticks selection -posblocks selection [-intersymbol boolean] [-intercolour integer] [-interticks boolean] [-gapsize integer] [-ticklines boolean] [-textheight float] [-textlength float] [-tickheight float] [-blockheight float] [-rangeheight float] [-gapgroup float] [-postext float] -graphout graph

cirdna -help

DESCRIPTION

cirdna is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Display" command group(s).

OPTIONS

Input section

-infile infile

Default value: inputfile

Additional section

-maxgroups integer

Default value: 20

-maxlabels integer

Default value: 10000

Output section

-ruler boolean

Default value: Y

-blocktype list

Default value: Filled

-originangle float

Default value: 90

-posticks selection

Default value: Out

-posblocks selection

Default value: In

-intersymbol boolean

Default value: Y

-intercolour integer

Default value: 1

-interticks boolean

Default value: N

-gapsize integer

Default value: 500

-ticklines boolean

Default value: N

-textheight float

Height of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-textlength float

Length of text. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-tickheight float

Height of ticks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-blockheight float

Height of blocks. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-rangeheight float

Height of range ends. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-gapgroup float

Space between groups. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-postext float

Space between text and ticks, blocks, and ranges. Enter a number <1.0 or >1.0 to decrease or increase the size, respectively Default value: 1.0

-graphout graph

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

cirdna is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0