CPGPLOT(1e) | EMBOSS Manual for Debian | CPGPLOT(1e) |
NAME¶
cpgplot - Identify and plot CpG islands in nucleotide sequence(s)
SYNOPSIS¶
cpgplot -sequence seqall -window integer -minlen integer -minoe float -minpc float -outfile outfile -plot toggle -graph xygraph -obsexp boolean -cg boolean -pc boolean -outfeat featout
cpgplot -help
DESCRIPTION¶
cpgplot is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
OPTIONS¶
Input section¶
-sequence seqall
Required section¶
-window integer
-minlen integer
-minoe float
-minpc float
Output section¶
-outfile outfile
-plot toggle
-graph xygraph
-obsexp boolean
-cg boolean
-pc boolean
-outfeat featout
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO¶
cpgplot is fully documented via the tfm(1) system.
AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |