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ONTOTEXT(1e) EMBOSS Manual for Debian ONTOTEXT(1e)

NAME

ontotext - Get ontology term(s) original full text

SYNOPSIS

ontotext -oboterms obo [-subclasses boolean] [-obsolete boolean] -outfile outfile

ontotext -help

DESCRIPTION

ontotext is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology,Data retrieval:Ontology data,Data retrieval:Text data" command group(s).

OPTIONS

Input section

-oboterms obo

Additional section

-subclasses boolean

Extend the query matches to include all terms which are specialisations (sub-classes) of the matched terms. Default value: N

-obsolete boolean

The default behaviour is to not use or return obsolete terms. This option if set will include all terms. Default value: N

Advanced section

Output section

-outfile outfile

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

ontotext is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0