Scroll to navigation

QUALITY_CHECK(1) User Commands QUALITY_CHECK(1)

NAME

quality_check - perform a sanity check on the mapping results (SAM file)

SYNOPSIS

quality_check [Options] SAMFILE

DESCRIPTION

Perform a sanity check on the mapping results (SAM file).

This tool analyzes the output of the read mapper and provides useful information to the user to decide whether the set of reference sequences and the mapper settings are feasible for the given dataset.

OPTIONS

Name of the SAM file to analyze
show this help message and exit
Path to the directory for the analysis output. [default: ./]
February 2014 quality_check SVNr18